Repositório RCAAP

Traits are key for understanding the environmental responses and ecological roles of organisms. Trait approaches to functional ecology are well established for plants, whereas consistent frameworks for animal groups are less developed. Here we suggest a framework for the study of the functional ecology of animals from a trait-based response–effect approach, using dung beetles as model system. Dung beetles are a key group of decomposers that are important for many ecosystem processes. The lack of a trait-based framework tailored to this group has limited the use of traits in dung beetle functional ecology. We review which dung beetle traits respond to the environment and affect ecosystem processes, covering the wide range of spatial, temporal and biological scales at which they are involved. Dung beetles show trait-based responses to variation in temperature, water, soil properties, trophic resources, light, vegetation structure, competition, predation and parasitism. Dung beetles' influence on ecosystem processes includes trait-mediated effects on nutrient cycling, bioturbation, plant growth, seed dispersal, other dung-based organisms and parasite transmission, as well as some cases of pollination and predation. We identify 66 dung beetle traits that are either response or effect traits, or both, pertaining to six main categories: morphology, feeding, reproduction, physiology, activity and movement. Several traits pertain to more than one category, in particular dung relocation behaviour during nesting or feeding. We also identify 136 trait–response and 77 trait–effect relationships in dung beetles. No response to environmental stressors nor effect over ecological processes were related with traits of a single category. This highlights the interrelationship between the traits shaping body-plans, the multi-functionality of traits, and their role linking responses to the environment and effects on the ecosystem. Despite current developments in dung beetle functional ecology, many knowledge gaps remain, and there are biases towards certain traits, functions, taxonomic groups and regions. Our framework provides the foundations for the thorough development of trait-based dung beetle ecology. It also serves as an example framework for other taxa.

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The subgenus Laurentomantis in the genus Gephyromantis contains some of the least known amphibian species of Madagascar. The six currently valid nominal species are rainforest frogs known from few individuals, hampering a full understanding of the species diversity of the clade. We assembled data on specimens collected during field surveys over the past 30 years and integrated analysis of mitochondrial and nuclear-encoded genes of 88 individuals, a comprehensive bioacoustic analysis, and morphological comparisons to delimit a minimum of nine species-level lineages in the subgenus. To clarify the identity of the species Gephyromantis malagasius, we applied a target-enrichment approach to a sample of the 110 year-old holotype of Microphryne malagasia Methuen and Hewitt, 1913 to assign this specimen to a lineage based on a mitochondrial DNA barcode. The holotype clustered unambiguously with specimens previously named G. ventrimaculatus. Consequently we propose to consider Trachymantis malagasia ventrimaculatus Angel, 1935 as a junior synonym of Gephyromantis malagasius. Due to this redefinition of G. malagasius, no scientific name is available for any of the four deep lineages of frogs previously subsumed under this name, all characterized by red color ventrally on the hindlimbs. These are here formally named as Gephyromantis fiharimpe sp. nov., G. matsilo sp. nov., G. oelkrugi sp. nov., and G. portonae sp. nov. The new species are distinguishable from each other by genetic divergences of >4% uncorrected pairwise distance in a fragment of the 16S rRNA marker and a combination of morphological and bioacoustic characters. Gephyromantis fiharimpe and G. matsilo occur, respectively, at mid-elevations and lower elevations along a wide stretch of Madagascar’s eastern rainforest band, while G. oelkrugi and G. portonae appear to be more range-restricted in parts of Madagascar’s North East and Northern Central East regions. Open taxonomic questions surround G. horridus, to which we here assign specimens from Montagne d’Ambre and the type locality Nosy Be; and G. ranjomavo, which contains genetically divergent populations from Marojejy, Tsaratanana, and Ampotsidy.

The golden-striped salamander is a streamside species endemic to the northwestern corner of the Iberian Peninsula. In the first half of the twentieth century, an undisclosed number of individuals of this species were reportedly captured in Buçaco, Central Portugal, and deliberately introduced in Sintra Mountains, 170 km south of its native distribution range. The discovery of a breeding population of this salamander in Sintra during 2015 prompted this work: we used neutral genetic markers, the mitochondrial DNA cytochrome b (cytb), and seven microsatellite loci to elucidate on the relict/human-introduced nature of Sintra population, identify the potential source population, and infer the severity of founder effect. Our results support a human-mediated introduction. First, sequencing analysis of cytb showed the presence of a unique haplotype (h31) in Sintra, which was detected only in Buçaco and in two additional populations located close to Mondego river. Second, microsatellite analysis showed that Sintra is more closely related to populations in between Douro and Mondego rivers (Central Portugal), instead of its geographically closest populations (southernmost), as would be expected if Sintra was a relict population isolated in an interglacial refuge. Third, Sintra presents both reduced levels of genetic variability and effective population size when compared to native populations, particularly to those of Central Portugal. Consistent with an isolated population funded by a small number of individuals (inferred herein to be ca. 10–11 salamanders), Sintra forms a geographically coherent genetic unit that is significantly differentiated from the extant native C. lusitanica populations. Although our data provide supporting evidence for Buçaco as a likely source population, as documented in the literature, overall, we cannot unequivocally exclude other populations close to Mondego river as a potential source of the introduced individuals in Sintra.

Recent research established a link between environmental alterations due to agriculture intensification, social damage and the loss of economic growth. Thus, the integration of environmental and social dimensions is key for economic development. In recent years, several frameworks have been proposed to assess the overall sustainability of farms. Nevertheless, the myriad of existing frameworks and the variety of indicators result in difficulties in selecting the most appropriate framework for study site application. This manuscript aims to: (i) understand the criteria to select appropriate frameworks and summarize the range of those being used to assess sustainability; (ii) identify the available frameworks to assess agricultural sustainability; and (iii) analyze the strengths, weaknesses and applicability of each framework. Six frameworks, namely SAFA, RISE, MASC, LADA, SMART and public goods (PG), were identified. Results show that SMART is the framework that considers, in a balanced way, the environmental, sociocultural and economic dimensions of sustainability, whereas others focused on the environmental (RISE), environmental and economic (PG) and sociocultural (SAFA) dimension. However, depending on the scale assessment, sector of application and the sustainability completeness intended, all frameworks are suitable for the assessment. We present a decision tree to help future users understand the best option for their objective.

The hyporheic zone (HZ) is a critical area of all river ecosystems. It is the area beneath the stream and adjacent to the stream, where the surface water and groundwater are mixed. The HZ extends both vertically and laterally depending on the sediment configuration, namely their porosity and permeability. This influences the hyporheic communities’ structural pattern and their active dispersal among distinct rivers compartments and alluvial aquifers. It is still difficult to assess the spatial extent of the HZ and the distribution of the mixing zones. This study applies time-lapse images obtained using electrical resistivity tomography (ERT) of 20 m wide and 5 m deep alluvial streams, with regards to the structural pattern of hyporheic communities represented by cyclopoids and ostracods, in order to assess the extent of the HZ in the riverbed and the parafluvial sediment configurations. The ERT images obtained at the hyporheic Site 1 are characterized by alluvial deposits dominated by coarse and very coarse sands with resistivity values ranging from ~20 to 80 Ohm.m, indicating a permeable zone up to ~0.5 m thick and extending laterally for ca. 5 m from the channel and associated with the hyporheic zone. The sediment configurations, texture, and structure indicate an active surface–hyporheic water exchange and low water retention into the sediments. This is also indicated by the hyporheic copepods and ostracods communities’ structure formed by a mixture of non-stygobites (five species) and stygobites (two species). A low-resistivity (<70 Ohm.m) permeable zone located 2.3 m below the streambed and unconnected with the river channel was also detected and associated with the associated alluvial aquifer. In contrast, the resistivity image at Site 2 dominated by coarse, medium, and very fine sands, shows a low-permeability zone in the upper ~0.5 m of the profile, with a resistivity value ranging from ~45 to 80 Ohm.m, indicating a reduced HZ extension in both vertical and lateral dimensions. Here the sediment configurations indicate that the water retention and interaction with the sediment is higher, reflected by more diverse hyporheic communities and with highly abundant stygobite species. The two examples show that non-invasive ERT images and biological assessments provide complementary and valuable information about the characterization of the sub-channel architecture and its potential hydraulic connection to the floodplain aquifer.

Information transfer between individuals typically depends on multiple sensory channels. Yet, how multi-sensory inputs shape adaptive behavioural decisions remains largely unexplored. We tested the relative importance of audio and visual sensory modalities in opponent size assessment in the vocal cichlid fish, Metriaclima zebra, by playing back mismatched agonistic sounds mimicking larger or smaller opponents during fights of size-matched males. Trials consisted in three 5-min periods: PRE (visual), PBK (acoustic+visual) and POST (visual). During PBK agonistic sounds of smaller (high frequency or low amplitude) or larger (low frequency or high amplitude) males were played back interactively. As a control, we used white noise and silence. We show that sound frequency but not amplitude affects aggression, indicating that spectral cues reliably signal fighting ability. In addition, males reacted to the contrasting audio-visual information by giving prevalence to the sensory channel signalling a larger opponent. Our results suggest that fish can compare the relevance of information provided by different sensory inputs to make behavioural decisions during fights, which ultimately contributes to their individual fitness. These findings have implications for our understanding of the role of multi-sensory inputs in shaping behavioural output during conflicts in vertebrates.

Bovine mastitis is an inflammation of the mammary gland caused by a multitude of pathogens with devastating consequences for the dairy industry. Global annual losses are estimated to be around €30 bn and are caused by significant milk losses, poor milk quality, culling of chronically infected animals, and occasional deaths. Moreover, mastitis management routinely implies the administration of antibiotics to treat and prevent the disease which poses serious risks regarding the emergence of antibiotic resistance. Conventional diagnostic methods based on somatic cell counts (SCC) and plate-culture techniques are accurate in identifying the disease, the respective infectious agents and antibiotic resistant phenotypes. However, pressure exists to develop less lengthy approaches, capable of providing on-site information concerning the infection, and in this way, guide, and hasten the most adequate treatment. Biosensors are analytical tools that convert the presence of biological compounds into an electric signal. Benefitting from high signal-to-noise ratios and fast response times, when properly tuned, they can detect the presence of specific cells and cell markers with high sensitivity. In combination with microfluidics, they provide the means for development of automated and portable diagnostic devices. Still, while biosensors are growing at a fast pace in human diagnostics, applications for the veterinary market, and specifically, for the diagnosis of mastitis remain limited. This review highlights current approaches for mastitis diagnosis and describes the latest outcomes in biosensors and lab-on-chip devices with the potential to become real alternatives to standard practices. Focus is given to those technologies that, in a near future, will enable for an on-farm diagnosis of mastitis

Screening tests were developed or adapted from RILEM recommendations, standards and past studies, and carried out to characterize some agro-industrial wastes and to assess their feasibility as aggregates for eco-efficient building composites. Spent coffee grounds, grape and olive press waste and hazelnut shells were used, as well as maritime pine chips as control material. Particle size distribution, loose bulk density, thermal conductivity and hygroscopicity properties were analysed. The selected bio-wastes did not show good thermal insulation properties if compared with some bio-wastes already studied and used for thermal insulation composites. Values of loose bulk density and thermal conductivity were between 325.6–550.5 kg/m3 and 0.078–0.107 W/(m·K); moisture buffering values higher than 2.0 g/(m2·%RH). Biological susceptibility to mould and termites were also tested, using not yet standardized methods. The low resistance to biological attack confirms one of the greatest drawbacks of using bio-wastes for building products. However, final products properties may be changed by adding other materials, pre-treatments of the wastes and the production process.

Carnivore intraguild dynamics depend on a complex interplay of environmental affinities and interspecific interactions. Context-dependency is commonly expected with varying suites of interacting species and environmental conditions but seldom empirically described. In South Africa, decentralized approaches to conservation and the resulting multi-tenure conservation landscapes have markedly altered the environmental stage that shapes the structure of local carnivore assemblages. We explored assemblage-wide patterns of carnivore spatial (residual occupancy probability) and temporal (diel activity overlap) co-occurrence across three adjacent wildlife-oriented management contexts—a provincial protected area, a private ecotourism reserve, and commercial game ranches. We found that carnivores were generally distributed independently across space, but existing spatial dependencies were context-specific. Spatial overlap was most common in the protected area, where species occur at higher relative abundances, and in game ranches, where predator persecution presumably narrows the scope for spatial asymmetries. In the private reserve, spatial co-occurrence patterns were more heterogeneous but did not follow a dominance hierarchy associated with higher apex predator densities. Pair-specific variability suggests that subordinate carnivores may alternate between pre-emptive behavioral strategies and fine-scale co-occurrence with dominant competitors. Consistency in species-pairs diel activity asynchrony suggested that temporal overlap patterns in our study areas mostly depend on species' endogenous clock rather than the local context. Collectively, our research highlights the complexity and context-dependency of guild-level implications of current management and conservation paradigms; specifically, the unheeded potential for interventions to influence the local network of carnivore interactions with unknown population-level and cascading effects.

Background: Animal pollination is an important ecosystem function and service, ensuring both the integrity of natural systems and human well-being. Although many knowledge shortfalls remain, some high-quality data sets on biological interactions are now available. The development and adoption of standards for biodiversity data and metadata has promoted great advances in biological data sharing and aggregation, supporting large-scale studies and science-based public policies. However, these standards are currently not suitable to fully support interaction data sharing. Results: Here we present a vocabulary of terms and a data model for sharing plant–pollinator interactions data based on the Darwin Core standard. The vocabulary introduces 48 new terms targeting several aspects of plant–pollinator interactions and can be used to capture information from different approaches and scales. Additionally, we provide solutions for data serialization using RDF, XML, and DwC-Archives and recommendations of existing controlled vocabularies for some of the terms. Our contribution supports open access to standardized data on plant–pollinator interactions. Conclusions: The adoption of the vocabulary would facilitate data sharing to support studies ranging from the spatial and temporal distribution of interactions to the taxonomic, phenological, functional, and phylogenetic aspects of plant–pollinator interactions. We expect to fill data and knowledge gaps, thus further enabling scientific research on the ecology and evolution of plant–pollinator communities, biodiversity conservation, ecosystem services, and the development of public policies. The proposed data model is flexible and can be adapted for sharing other types of interactions data by developing discipline-specific vocabularies of terms

Due to the high market value of cashew nut, cashew became a significantly important cash crop in many countries. Originating from Brazil, the plant was introduced into Africa, India, and Southeast Asia and is nowadays found across most of the tropical regions. However, the diseases that threaten and compromise crop production have not yet been comprehensively documented. The aim of this study was to examine the published scientific data on cashew diseases, to identify current knowledge gaps, and to present a review of the most important diseases and pathogens affecting cashew productivity. The most described diseases are caused by fungi genera—mainly Colletotrichum, Lasiodiplodia, and Erysiphe (worldwide); Cryptosporiopsis (East Africa); and recently Fusarium in Tanzania. Other fungal genera (e.g., Septoria, Pilgeriella, and Pestalotia) may correspond to emerging local cashew diseases that have not yet expanded to other geographic regions or for which records are lacking. Gummosis (Lasiodiplodia spp.), which is considered the most prevalent and damaging disease of cashew, has a pantropical distribution. There is large discrepancy concerning the causal agents of cashew diseases that might be explained by the lack of proper species identification through morpho-cultural and molecular approaches. This, in turn, can easily lead to misdiagnoses that have serious negative consequences for the implementation of specific control actions. It is important to establish a standardized identification workflow that will allow a reliable identification of the disease-causing agent and to determine the occurrence and/or expansion of a given pathogen across cashew-producing regions.

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Cashew is an important export-oriented crop in several tropical countries, often under monocropping systems. Intercropping with legume species is promoted as a sustainable practice, enhancing agricultural productivity and providing nutritional food sources to rural communities. This study aimed to characterize the diversity of Leguminosae (or Fabaceae) in the cashew agroforestry systems of East Timor (Southeast Asia). Fourteen cashew orchards were sampled across the country, and information about leguminous species uses was collected from local populations. About 50 species are commonly part of the country’s cashew agroforestry system, many of them simultaneously used as food, fodder, and in traditional medicine. Six bean species—Cajanus cajan (L.) Huth, Phaseolus lunatus L., Phaseolus vulgaris L., Vigna angularis (Willd.) Ohwi and H.Ohashi, Vigna radiata (L.) R.Wilczek and Vigna unguiculata (L.) Walp.—are largely used as food. The mineral contents of these beans revealed relevant differences between species and, in some cases, between types (seed colour) within species. Periods of hunger and low food variety are frequent in East Timor, reflecting a very poor nutritional state of the population. Knowing and using legumes for local nutrition, as well as for healthcare and well-being, adds great value to these species as components of East Timor cashew agroforestry systems.

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The present-day COVID-19 pandemic has led to the increasing daily use of antimicrobials worldwide. Triclosan is a manmade disinfectant chemical used in several consumer healthcare products, and thus frequently detected in surface waters. In the present work, we aimed to evaluate the effect of triclosan on diatom cell photophysiology, fatty acid profiles, and oxidative stress biomarkers, using the diatom Phaeodactylum tricornutum as a model organism. Several photochemical effects were observed, such as the lower ability of the photosystems to efficiently trap light energy. A severe depletion of fucoxanthin under triclosan application was also evident, pointing to potential use of carotenoid as reactive oxygen species scavengers. It was also observed an evident favouring of the peroxidase activity to detriment of the SOD activity, indicating that superoxide anion is not efficiently metabolized. High triclosan exposure induced high cellular energy allocation, directly linked with an increase in the energy assigned to vital functions, enabling cells to maintain the growth rates upon triclosan exposure. Oxidative stress traits were found to be the most efficient biomarkers as promising tools for triclosan ecotoxicological assessments. Overall, the increasing use of triclosan will lead to significant effects on the diatom photochemical and oxidative stress levels, compromising key roles of diatoms in the marine system.

Abundance–Biomass Comparison (ABC) models, first described for marine benthic macrofauna, have been applied successfully to other marine and terrestrial/freshwater fauna but never to ecotonal communities. In particular, to our knowledge, ABC models have not been applied to hyporheic communities. This study represents the first application of ABC models to hyporheic assemblages. We aimed at testing the effectiveness of ABC models in describing the perturbation of hyporheic communities subjected to an existing/known disturbance. To this end, we applied the models to the hyporheic community of an Apennine creek, where the hyporheic waters of the upstream stretch were uncontaminated, whereas those of the downstream stretch were contaminated by ammonium. We also tested separated models for the summer and winter periods to account for potential variability due to season. ABC models provided a satisfactory description of the hyporheic community changes due to ammonium by showing the abundance dominance curve overlying that of the biomass in the downstream stretch contrarily to what was observed in the upstream stretch. However, ABC models did not highlight any significant seasonal effects. Our results showed that ABC models have the potential to be used as assessment tools for ecological quality of hyporheic zones in temperate regions.

The use of glyphosate-based herbicides (GBHs) worldwide has increased exponentially over the last two decades increasing the environmental risk to marine and coastal habitats. The present study investigated the effects of GBHs at environmentally relevant concentrations (0, 10, 50, 100, 250, and 500 μg·L−1) on the physiology and biochemistry (photosynthesis, pigment, and lipid composition, antioxidative systems and energy balance) of Ulva lactuca, a cosmopolitan marine macroalgae species. Although GBHs cause deleterious effects such as the inhibition of photosynthetic activity, particularly at 250 μg·L−1, due to the impairment of the electron transport in the chloroplasts, these changes are almost completely reverted at the highest concentration (500 μg·L−1). This could be related to the induction of tolerance mechanisms at a certain threshold or tipping point. While no changes occurred in the energy balance, an increase in the pigment antheraxanthin is observed jointly with an increase in ascorbate peroxidase activity. These mechanisms might have contributed to protecting thylakoids against excess radiation and the increase in reactive oxygen species, associated with stress conditions, as no increase in lipid peroxidation products was observed. Furthermore, changes in the fatty acids profile, usually attributed to the induction of plant stress response mechanisms, demonstrated the high resilience of this macroalgae. Notably, the application of bio-optical tools in ecotoxicology, such as pulse amplitude modulated (PAM) fluorometry and laser-induced fluorescence (LIF), allowed separation of the control samples and those treated by GBHs in different concentrations with a high degree of accuracy, with PAM more accurate in identifying the different treatments.

The use of medicinal plants in a variety of health conditions remains essential for the discovery of new treatments. The present study aimed to investigate the bioactive properties of three native plants from Cabo Verde Islands, namely Artemisia gorgonum Webb, Sideroxylon marginatum (Decne. ex Webb) Cout., and Tamarix senegalensis DC., contributing to the characterization of less-known medicinal plants and their potential benefits for human health. Known compounds, such as kaempferol, quercetin, caffeyolquinic, and apigenin derivatives, among others, were detected in the plant species under study. Overall, all species demonstrated good antioxidant capacity, especially the ethanolic extracts of A. gorgonum (EC50 = 0.149 mg/mL) in TBARS assay. Moreover, the ethanolic extracts of the studied plants showed cytotoxic properties against tumor cells, and again the A. gorgonum extract proved to be the most effective in inhibiting tumor growth, mainly in the CaCO2 (GI50 = 17.3 μg/mL) and AGS (GI50 = 18.2 μg/mL) cell lines. Only the ethanolic extracts of T. senegalensis and S. marginatum demonstrated anti-inflammatory activity, albeit weak (EC50 = 35 and 43 μg/mL, respectively). The present study contributed to increased knowledge about the bioactive properties of these plants commonly used in traditional medicine, some of which was discussed for the first time, opening new perspectives for their use in a wider range of health conditions, especially in African countries, where access to modern health care is more limited.