RCAAP Repository

Notwithstanding lineage-specific variations, the number and type of protein-coding genes remain relatively static across the animal kingdom. By contrast there has been a massive expansion in the extent of genomic non-proteincoding sequences with increasing developmental complexity. These non-coding sequences are, in fact, transcribed in a regulated manner to produce large numbers of large and small non-protein-coding RNAs that control gene expression at many levels including chromatin architecture, post-transcriptional processing and translation. Moreover, many RNAs are edited, especially in the nervous system, which may be the basis of epigenome-environment interactions and the function of the brain.

To obtain the recombinant group 2 allergen product of Dermatophagoides farinae (Der f 2), the Der f 2 gene was synthesized by RT-PCR. The full-length cDNA comprised 441 nucleotides and was 99.3% identical to the reference sequence (GenBank AB195580). The cDNA was bound to vector pET28a to construct plasmid pET28a(+)-Der f 2, which was transformed into E. coli BL21 and induced by IPTG. SDS-PAGE showed a specific band of about 14kDa in the hole cell lysate. s estiated by chroatography, about 3.86 g of the recobinant product as obtained, which conjugated with serum IgE from asthmatic children. The protein had a signal peptide of 17 amino acids. Its secondary structure comprised an alpha helix (19.86%), an extended strand (30.82%), and a random coil (49.32%). The subcellular localization of this allergen was predicted to be at mitochondria. Furthermore, its function was shown to be associated with an MD-2-related lipid-recognition (ML) domain. The results of this study provide a solid foundation for large-scale production of the allergen for clinical diagnosis and treatent of allergic disorders.

The aim of this study was to analyze the data of endoscopy and symptoms in 118 Mexican patients with irritable bowel syndrome (IBS), dyspepsia, non-erosive reflux disease (NERD) and erosive esophagitis (EE). IBS criteria were fulfilling for dyspepsia patients in 47%, for NERD in 48%, and for EE patients in 48% of cases. Esophagitis was present in 42% of patients with IBS and in 45% of patients with dyspepsia. A higher prevalence of hiatus hernia was found in EE vs. NERD. Heartburn and acid eructation were associated with the presence of esophagitis; acid eructation, regurgitation and nocturnal pain with duodenitis; and heartburn and regurgitation with hiatus hernia. Males more frequently reported: ucus in feces, abdoinal distension, nausea and gastritis; and oen ore frequently reported esophagitis and duodenitis. Patients with NERD (OR 2.54, 95% CI 1.08 to 5.99, p=0.04), tenesmus and early satiety, and men had an increase risk for reporting hard or lumpy stools. In conclusion, nearly half of the Mexican patients with NERD, EE and dyspepsia fulfill criteria for IBS. A large number of symptoms were correlated with endoscopy, which can be used to improve the indication of the endoscopy and its implementation in clinical studies.

This study was carried out with the aim of evaluating the spatial variation of the water quality in the Itajaí-Açú River estuary. Seven stations along the estuary were monitored on a weekly basis, from October 2003 to December 2004, plus two stations in tributaries (Itajaí-Mirim River, the main tributary, and one reference station). This monitoring included measurements of salinity, pH, dissolved oxygen, temperature, nutrients(NH+4,NO3-2,NO-3,PO3-4,H4SiO4) Biochemical Oxygen Demand (BOD), total phosphorous and dissolved organic phosphorus (TP and DOP), particulate organic carbon (POC), suspended particulate matter (SPM) and chlorophyll-a (Cla). Multivariate analyses demonstrated the compartmentalization of the system based on the deterioration in water quality and marine influence. Urban development was the main factor responsible for the spatial variation of the monitored variables, resulting in increases in the indicators for organic matter and a progressive decrease in O2. Despite the effect of dilution by marine influence, there was an increase in ammonium, attributed to the influence of the municipal districts of Itajaí and Navegantes, close to the river mouth.

The style of deformation of rocks from basin-infilling sequences in positively inverted natural basins was discussed upon the results of laboratory experiments carried out in sandboxes with sand packs laid down in the space between two wooden blocks. The space simulated stages of crustal extension leading to (1) a half graben due to extension above a listric extensional detachment, with the blocks simulating the footwall and hanging wall, or (2) a graben, with the blocks simulating the external margins that drifted apart above a horizontal detachment. Combinations of two different angles were used to simulate the dip of curved normal faults along the internal face of the wooden blocks. Backstops in the half graben had a convex up internal face. Backstops in the graben had a concave up internal face. Shortening as partitioned in forward and backward movements within the sand packs, and the kinematics of contraction was largely influenced by the convex or concave internal faces. A buttress effect characterized by rotation of the sand pack close to the footwall was stronger for footwall with steeper-dipping internal faces. The results were compared to other physical experiments and applied to an inverted basin found in nature.

The distribution of selected aromatic compounds and microbiology were assessed in superficial sediments from Suruí Mangrove, Guanabara Bay. Samples were collected at 23 stations, and particle size, organic matter, aromatic compounds, microbiology activity, biopolymers, and topography were determined. The concentration of aromatic compounds was distributed in patches over the entire mangrove, and their highest total concentration was determinated in the mangrove's central area. Particle size differed from most mangroves in that Suruí Mangrove has chernies on the edges and in front of the mangrove, and sand across the whole surface, which hampers the relationship between particle size and hydrocarbons. An average @ 10% p/p of organic matter was obtained, and biopolymers presented high concentrations, especially in the central and back areas of the mangrove. The biopolymers were distributed in high concentrations. The presence of fine sediments is an important factor in hydrocarbon accumulation. With high concentration of organic matter and biopolymers, and the topography with chernies and roots protecting the mangrove, calmer areas are created with the deposition of material transported by wave action. Compared to global distributions, concentrations of aromatic compounds in Suruí Mangrove may be classified from moderate to high, showing that the studied area is highly impacted.

The coastal sedimentation model in the Doce River mouth and surroundings extends beyond the hydraulic jetty effect created by its stream-flow. During flooding, marine sediments transported by longshore currents are retained on the updrift side, causing strandline progradation. As the longshore current direction varies, local depositional and erosional effects can be produced and identified laterally within beach profiles from north and south of the Doce River mouth area. Sedimentological studies carried out in this river, beach and adjacent inner continental shelf sands showed that, at present, the influence of Doce River sediments is restricted to the area surrounding its mouth. Meanwhile, beach morphodynamic stages and present-day coastal-plain processes of sedimentation are directly affected by the Doce River discharge as a natural continuation of the Quaternary geological evolution of the area.

Two almost complete long-tailed pterosaurs from the Linglongta, Jianchang County, western Liaoning, China, are described and represent new taxa referred to the non-pterodactyloid clade Wukongopteridae. Kunpengopterus sinensis gen. et sp. nov. differs from other members of this clade mainly by the rounded posterior region of the skull, thick lacrimal process of the jugal and lack of a bony premaxillary crest. This species further shows a soft tissue crest above the frontal, a comparatively larger wing finger, and the proximal segment of the second pedal phalanx of the fifth toe shorter than in other wukongopterids. The second new species is referred to the genus Darwinopterus, D. linglongtaensis sp. nov. based on the posterior region of the skull. It further differs from other wukongopterid pterosaurs by the thin lacrimal process of the jugal, foramen on nasal process rounded, and by having the second pedal phalanx of the fifth toe less curved (115°). Several differences among the Wukongopteridae can be found in the dentition and the feet, suggesting that they might have occupied slightly different ecological niches. The long-tailed Changchengopterus pani is tentatively referred to this clade and new diagnosis for the wukongopterids Wukongopterus lii and Darwinopterus modularis is provided.

Considered one of the best known flying reptiles, Pteranodon has been subject to several reviews in the last century. Found exclusively in the Upper Cretaceous Niobrara Formation and Pierre Shale Group 11 species have been attributed to this genus (excluding the ones presently regarded as representing Nyctosaurus). While reviewers agree that this number is inflated, there is disagreement on how many species can be identified. The last review recognized only two species (Pteranodon longiceps and Pteranodon sternbergi) both being sexually dimorphic. Based on several cranial features, some specimens previously referred to the genus Pteranodon are re-evaluated leading to the recognition of the following species, two of which new that are described here: Pteranodon longiceps, Geosternbergia sternbergi, Geosternbergia maiseyi sp. nov., and Dawndraco kanzai gen. et sp. nov. They differ mainly by features such as the direction and extension of the frontal crest, the angle and extension of the posterior process of the premaxillae, the shape and extension of the lower temporal fenestra and the length and proportion of the rostrum. The procedures to recognize a pterosaur species are also discussed here, and must take into account primarily morphology, in conjunction with stratigraphic and geographic data. Although well aware that changes in morphology not always reflect taxonomy, the lack of stratigraphic data and the limited number of specimens that can be confidently assigned to one species hampers our understanding on the morphological variations as a function of ontogeny, individual variation and sexual dimorphism. Although the present study has not eliminated the possibility to recognize such differences, caution is needed before models are generalized for pterosaurs.

The Cerrado region, with over 50 million hectares of cultivated pasture, provides 55% of Brazilian beef production. Previous investigations have shown that about 70-80% of this pasture is affected by some kind of degradation, leading to low productivity. However, until now, few surveys have been carried out on a regional scale. The aim of the present work is both to assess the fertility and acidity levels of Cerrado soils under pasture and compare the variability of the soils characteristics on a regional scale. Two soil depths were sampled in different places within the studied area: (1) a surface horizon (0.0-0.2 m) in order to evaluate its fertility and acidity status for pasture, and (2) a subsurface horizon (0.6-0.8 m), used for classification. Most of soils had levels of nutrients below the reference values for adequate pasture development. Whatever the texture, about 90% of soils had low or very low availability of phosphorus. Only 7 to 14% of soils had low pH, high exchangeable aluminum, and aluminum saturation above the critical acidity level. Except for nitrogen, no significant difference was found between Latossolos Vermelhos and Latossolos Vermelho-Amarelos.

The resilience, ecological function and quality of both agricultural and natural systems were evaluated in the mountainous region of the Atlantic Rain Forest of Rio de Janeiro through Rapid Assessment Methods. For this goal new indicators were proposed, such as eco-volume, eco-height, bio-volume, volume efficiency, and resilience index. The following agricultural and natural systems have been compared according: (i) vegetables (leaf, fruit and mixed); (ii) citrus; (iii) ecological system; (iv) cattle, (v) silvo-pastoral system, (vi) forest fragment and (vii) forest in regeneration stage (1, 2 and 3 years old). An alternative measure (index) of resilience was proposed by considering the actual bio-volume as a function of the potential eco-volume. The objectives and hypotheses were fulfilled; it is shown that there does exist a high positive correlation between resilience index, biomass, energy efficiency and biodiversity. Cattle and vegetable systems have lowest resilience, whilst ecological and silvo-pastoral systems have greatest resilience. This new approach offers a rapid, though valuable assessment tool for ecological studies, agricultural development and landscape planning, particularly in tropical countries.

In this work we study the problem of modeling identification of a population employing a discrete dynamic model based on the Richards growth model. The population is subjected to interventions due to consumption, such as hunting or farming animals. The model identification allows us to estimate the probability or the average time for a population number to reach a certain level. The parameter inference for these models are obtained with the use of the likelihood profile technique as developed in this paper. The identification method here developed can be applied to evaluate the productivity of animal husbandry or to evaluate the risk of extinction of autochthon populations. It is applied to data of the Brazilian beef cattle herd population, and the the population number to reach a certain goal level is investigated.

Chlosyne lacinia saundersii is one of the most important pests of sunflower and it is the main target of insecticides applications. Larvae were collected in Londrina (PR), Santa Maria (RS), Dourados (MS), Ribeirão Preto (SP), Brasília (DF), Barreiras (BA), Uberaba (MG) and Vilhena (RO). Genomic DNA was extracted and amplified with ten-mer primers, which produced 101 loci. The size of the RAPD amplicons ranged from 180 to 2564 bp. Polymorphism among populations ranged from 31% to 67%, with the highest polymorphisms of 57% and 67% being detected in Uberaba and Vilhena populations, respectively. Populations with the highest similarity determined with Dice coefficient were from Ribeirão Preto and Barreiras, while insects from Londrina showed the highest similarity among them. Gene flow of C. lacinia saundersii 1.1 was lower than those previously observed for the noctuid Anticarsia gemmatalis Hübner, suggesting that C. lacinia saundersii populations are more isolated than the ones of this noctuid. Through the Analysis of Molecular Variance (AMOVA), RAPD variance was 33.64% among geographical populations and 66.36% within populations. These results suggest that populations of C. lacinia saundersii are genetically structured.

In the Amazon region, there is no information on the fertilization of banana plants with boron (B). Besides this, the extractant (hot water) currently used to test B concentrations has many limitations. The aim of this work was to study the effect of B on the fruit yield and quality of banana plants of the Cavendish (AAA) sub-group, grown in dystrophic Yellow Latosol (Oxisol or Xanthic Ferralsol), in the Amazonas State, Brazil. The experimental design was completely randomized split plot in a 4 x 2 factorial scheme, composed of four B rates (0, 4, 8 and 12 kg ha-1) and two harvest cycles (sub-treatments), with four replicates. The B availability in the soil was determined by three extractants: Mehlich 3, hot water and KCl 1.0 mol L-1. The application of B influences the fruit yield, pulp/peel ratio, pulp resistance and B content in the leaves and fruits. The KCl 1.0 mol L-1 extractant was similar to the hot water in the evaluation of available B. To obtain maximum yield, it is necessary to apply 4.1 and 6.1 kg ha-1 of B in the first and second cycles, respectively.

The Quaternary fossil record of Águas de Araxá (Q AA) is represented mainly by an accumulation of skeletal elements of several sizes, which are assigned to a population of Stegomastodon waringi. We analyzed 97 molars according to the ear stages of Sipson and Paula-Couto (1957), and developed a orphoetric ear index. The population structure (proportion of immature, subadult, adult, mature adult and senile adult individuals) was identified, and these five age classes were compared to those of extant elephant populations and defined with social implications. The analysis made possible to establish that the population is largely composed of adults: 14.89% are immature individuals, 23.04% subadults, 27.65% adults, 17.21% mature adults and another 17.21% senile adults. Based on population structure, we do not discard the possibility that the fossil population was stable or in recovery, and/or was experiencing a high-predation period on younger individuals. The number of individuals composing the past population studied here could suggest that the occupied environment was open due to comparisons to populations of extant elephants. We consider this population as an aggregation of family units, which suggests a time of low environmental humidity. Based on literature and our findings, their extinction appears to be regional and probably related to a catastrophic event.

Gondwana landmasses have served as large-scale biogeographic Noah's Arks and Beached Viking Funeral Ships, as defined by McKenna. The latitudinal trajectories of selected Gondwana dinosaur localities were traced through time in order to evaluate their movement through climate zones relative to those in which they originally formed. The dispersal of fauna during the breakup of Gondwana may have been facilitated by the presence of offshelf islands forming landspans (sensu Iturralde-Vinent and MacPhee) in the Equatorial Atlantic Gateway and elsewhere.

The record of dinosaur body-fossils in the Brazilian Mesozoic is restricted to the Triassic of Rio Grande do Sul and Cretaceous of various parts of the country. This includes 21 named species, two of which were regarded as nomina dubia, and 19 consensually assigned to Dinosauria. Additional eight supraspecific taxa have been identified based on fragmentary specimens and numerous dinosaur footprints known in Brazil. In fact, most Brazilian specimens related to dinosaurs are composed of isolated teeth and vertebrae. Despite the increase of fieldwork during the last decade, there are still no dinosaur body-fossils of Jurassic age and the evidence of ornithischians in Brazil is very limited. Dinosaur faunas from this country are generally correlated with those from other parts of Gondwana throughout the Mesozoic. During the Late Triassic, there is a close correspondence to Argentina and other south-Pangaea areas. Mid-Cretaceous faunas of northeastern Brazil resemble those of coeval deposits of North Africa and Argentina. Southern hemisphere spinosaurids are restricted to Africa and Brazil, whereas abelisaurids are still unknown in the Early Cretaceous of the latter. Late Cretaceous dinosaur assemblages of south-central Brazil are endemic only to genus or, more conspicuously, to species level, sharing closely related taxa with Argentina, Madagascar, Indo-Pakistan and, to a lesser degree, continental Africa.

The study of pelvic and hind limb bones and muscles in basal dinosaurs is important for understanding the early evolution of bipedal locomotion in the group. The use of data from both extant and extinct taxa placed into a phylogenetic context allowed to make well-supported inferences concerning most of the hind limb musculature of the basal saurischian Staurikosaurus pricei Colbert, 1970 (Santa Maria Formation, Late Triassic of Rio Grande do Sul, Brazil). Two large concavities in the lateral surface of the ilium represent the origin of the muscles iliotrochantericus caudalis plus iliofemoralis externus (in the anterior concavity) and iliofibularis (in the posterior concavity). Muscle ambiens has only one head and originates from the pubic tubercle. The origin of puboischiofemoralis internus 1 possibly corresponds to a fossa in the ventral margin of the pré-acetabular iliac process. This could represent an intermediate stage prior to the origin of a true pré-acetabular fossa. Muscles caudofemorales longus et brevis were likely well developed, and Staurikosaurus is unique in bearing a posteriorly projected surface for the origin of caudofemoralis brevis.

A new spinosaurid taxon, Oxalaia quilombensis gen. et sp. nov., is described based on the anterior part of a snout and a fragment of a maxilla. These specimens were collected at the Laje do Coringa site, Late Cretaceous (Cenomanian) of the São Luis Basin. Unlike Cristatusaurus and Suchomimus, Oxalaia quilombensis lacks serrations on the teeth. The new species differs from Angaturama limai by having the anterior part of the premaxillae more expanded and by lacking a sagittal premaxillary crest. It further differs from Spinosaurus cf. S. aegyptiacus and the Algerian spinosaurid by the rounder shape of the terminal expansion. Furthermore, xalaia quilobensis has one functional tooth followed by two replacement teeth, a feature not previously observed in theropods. Oxalaia quilombensis appears to be more closely related to the spinosaurids found in North Africa than to the Brazilian members of this clade and thus further increases the diversity of these enigmatic predatory dinosaurs in this country.

Here we report on a new small deinonychosaurian theropod, Pamparaptor micros gen. et sp. nov., from the Late Cretaceous of Patagônia, Argentina. Pamparaptor micros exhibits a pedal structure previously unknown among South Américan deinonychosaurians. The new material provides new evidence about the morphology and taxonomic diversity of Patagônian deinonychosaurs. Pamparaptor is the smaller non-avialae Patagônian deinonychosaur, probably with about 0.50-0.70 meters, long. The pedal construction resembles, that of Troodontid or basal Dromaeosaurids. Nevertheless, up to now, we considered Pamparaptor a peculiar Patagônian Dromaeosaurid with troodontid-like pes.