RCAAP Repository

Vaccination is the most practical and cost-effective strategy to prevent the majority of the flavivirus infection to which there is an available vaccine. However, vaccines based on attenuated virus can potentially promote collateral side effects and even rare fatal reactions. Given this scenario, the developent of alternative vaccination strategies such as DNA-based vaccines encoding specific flavivirus sequences are being considered. Endogenous cytoplasmic antigens, characteristically plasmid DNA-vaccine encoded, are mainly presented to the immune system through Major Histocompatibility Complex class I - MHC I molecules. The MHC I presentation via is mostly associated with a cellular cytotoxic response and often do not elicit a satisfactory humoral response. One of the main strategies to target DNA-encoded antigens to the MHC II compartment is expressing the antigen within the Lysosome-Associated Membrane Protein (LAMP). The flavivirus envelope protein is recognized as the major virus surface protein and the main target for neutralizing antibodies. Different groups have demonstrated that co-expression of flavivirus membrane and envelope proteins in mammalian cells, fused with the carboxyl-terminal of LAMP, is able to induce satisfactory levels of neutralizing antibodies. Here we reviewed the use of the envelope flavivirus protein co-expression strategy as LAMP chimeras with the aim of developing DNA vaccines for dengue, West Nile and yellow fever viruses.

The management of acute dengue patients during outbreaks is a challenging problem. Most of the dengue fever cases are benign, but some cases develop into a severe and possibly lethal vasculopathy, known as dengue hemorrhagic fever. Early symptoms of dengue and hemorrhagic fever are very similar. An early differential diagnosis is needed to predict which of these two clinical presentations is crucial to proper patient care and public health management. This study evaluates the predictive potential of specific mRNA expression markers of dengue hemorrhagic fever using quantitative real-time PCR assays. Six candidate "dengue hemorrhagic fever specific signature genes" were evaluated and all showed good correlation among their transcription levels at early days of infection and the later development of severe vasculopathy. The markers selected were able to indicate, at early stages of infection, the evolution of a dengue-infected patient to the severe form of the illness. Despite the fact that these results grant further validation studies, the panel of candidate prognostic markers obtained demonstrated the potential to be useful for clinical use in the form of a fast assay based in blood samples.

The P element is one of the most thoroughly studied transposable elements (TE). Its mobilization causes the hybrid dysgenesis that was first described in Drosophila melanogaster. While studies of the P element have mainly been done in D. melanogaster, it is believed that Drosophila willistoni was the original host species of this TE and that P was transposed to the D. melanogaster genome by horizontal transfer. Our study sought to compare the transcriptional behavior of the P element in embryos of D. melanogaster, which is a recent host, with embryos of two strains of D. willistoni, a species that has contained the P element for a longer time. In both species, potential transcripts of transposase, the enzyme responsible for the TE mobilization, were detected, as were transcripts of the 66-kDa repressor, truncated and antisense sequences, which can have the ability to prevent TEs mobilization. The truncated transcripts reveal the truncated P elements present in the genome strains and whose number seems to be related to the invasion time of the genome by the TE. No qualitative differences in antisense transcripts were observed among the strains, even in the D. willistoni strain with the highest frequency of heterochromatic P elements.

The scope of this work was to rescue and document the traditional knowledge regarding the medicinal plants used by Passo da Ilha rural community, in Pato Branco, Paraná State, Southern Brazil (26° 11' S, 52°36' W and 760 m high). Structured interviews were made in field research with 16 informants who had the traditional knowledge about medicinal plants. The research was carried out from October to December 2000. The plants were collected in the field, identified and their vouchers were housed at the Herbarium "Irina Delanova De Gemtchjnicov" (BOTU) of São Paulo State University, in Botucatu. A total of 47 botanical families and 114 species of medicinal plants were identified. These plants ere suitable for ore than 30 different edicinal uses. The residents are mainly of European descent, which justify the presence of many exotic plants. The knowledge on how to use medicinal plants properly is held mainly by the females, and decreases in the newer generations, denoting "cultural erosion" in progress.

Araucaria angustifolia (Bert.) O. Kuntze is a dioecious conifer species native of Brazil. The rare occurrence of monoiceous specimens have been attributed to pathogenic infections or other injuries in adult trees. Here, the morphological characteristics of male and female cones and pollen grains of a monoiceous A. angustifolia are described. Male and female cones and pollen grains presented normal morphology, lacking any sort of injuries or infection and suggesting the existence of further grounds for the occurrence of monoicy in this conifer species.

An agent-based computer simulation of death by inheritable mutations in a changing environment shows a maximal population, or avoids extinction, at some intermediate mutation rate of the individuals. Our results indicate that death seems needed to allow for evolution of the fittest, as required by a changing environment.

Malaria remains one of the most serious world health problem and the major cause of mortality and morbidity in the endemic regions. Brazil is among the 30 high-burden countries and most of the cases occur in the Legal Amazonian Region. New chemotherapeutical agents are needed for the treatment of malaria. Many plant species are used in traditional medicines of malarious countries and a relatively few number of these have been investigated for evaluation of their antimalarial effect. Still lower is the number of those that have had the active natural compounds isolated and the toxicity determined. This area is, then, of great research interest. discovery project of antimalarial natural products from plants traditionally used to treat malaria must include in vitro and in vivo assays as well as bioguided isolation of active compounds. The final products would be antimalarial chemical entities, potential new drugs or templates for new drugs development, and/or standardized antimalarial extracts which are required for pre-clinical and clinical studies when the aim is the development of effective and safe phythomedicines. This review discusses these two approaches, presents briefly the screening methodologies for evaluation of antimalarial activity and focuses the activity of alkaloids belonging to different structural classes as well as its importance as new antimalarial drugs or leads and chemical markers for phytomedicines.

Tidal processes were important for deposition of the Barreiras Formation located in northern Brazil, while correlatable deposits in northeastern Brazil have been traditionally related to continental environments. Facies analysis in southern Alagoas revealed that the Barreiras Formation consists of cross-stratified conglomerates and sandstones (facies Sx and Cgx), compound cross-stratified sandstones (facies Cx), and heterolithic beddings (facies H). A significant portion of these deposits occurs within channel morphologies displaying fining and thinning upward successions. An abundance of sedimentary features is comparable to those from the northern Brazilian counterpart. These include: tidal bundles; herringbone cross-stratification; heterolithic beddings with sandstone and mudstone beds in sharp contacts; and ichnofossils mostly consisting of Ophiomorpha nodosa, Skolithos and Planolites. Altogether, these features point to a marginal marine depositional setting dominated by tidal processes, which are related to an estuarine system, an interpretation also provided for the Barreiras Formation in northern Brazil. The widespread occurrence of deposits with unambiguous evidence of tidal processes in the Barreiras Formation of northern Brazil, and now in the State of Alagoas, leads to argue that the early/middle Miocene worldwide marine transgression might have left a much more widespread sedimentary record along the Brazilian coast than currently regarded.

Despite the indisputable significance of identification of modern analogs for Paleoecology research, relatively few studies attempted to integrate modern and fossil samples on paleoenvironmental reconstructions. In Palynology, this general pattern is not different from other fields of Paleoecology. This study demonstrates the practical application of modern pollen deposition data on paleoenvironmental reconstructions based on fossil pollen by using multivariate analysis. The main goal of this study was to use Detrended Correspondence Analysis (DCA) to compare pollen samples from two sediment cores collected at Lagoa Salgada, a coastal lagoon located at northeastern Rio de Janeiro State. Furthermore, modern surface samples were also statistically compared with samples from both cores, providing new paleoecological insights. DCA demonstrated that samples from both cores are more similar than previously expected, and that a strong pattern, related to a paleoenvironmental event, is present within the fossil data, clearly identifying in the scatter plot samples that represent pre- and post-environmental change. Additionally, it became apparent that modern vegetation and environmental conditions were established in this region 2500 years before present (BP). Multivariate Analysis allowed a more reliable integration of modern and fossil pollen data, proving to be a powerful tool in Paleoecology studies that should be employed more often on paleoclimate and paleoenvironmental reconstructions.

The depositional model of the Cabeças Formation is re-evaluated in the context of the Devonian paleogeography of the Parnaíba Basin, and with particular reference to similarities between the formation's facies associations on the eastern border of the basin and the flood-dominated fluvio-deltaic system facies that have been discussed in recent literature. The widespread occurrence and nature of sigmoidal clinoforms (with asymptotic cross-stratification and climbing ripples) of the Cabeças Formation are here considered as strong evidence of flood-influenced depositional settings. Sandy strata of the Passagem Member, in the vicinity of Pimenteiras and Picos (Piauí State), are interpreted as the distal part of fine-grained mouth-bar deposits interbedded with delta-front sandstone lobes showing hummocky cross-stratification. Richly fossiliferous levels, with diverse megainvertebrates and plant cuticles, occur within the delta-front lobes and the distal mouth-bar deposits, reflecting continuation of shallow marine conditions.

The late Cambrian - late Tremadocian La Silla Formation is a carbonate unit of the eastern Precordillera in Argentina whose facies indicate a shallow platform environment. Until this moment, there were no studies that referred to the diagenetic evolution of these rocks. The present study involves the characteristics and distribution of the silicification that affects this unit and determines its different diagenetic stages through petrographic (with cathodoluminescence support) and stratigraphic analyses. An early diagenetic chert, in a stage previous to the compactation, was observed. This chert is related to silica-rich seawater in contact with permeable and porous sediments. A later pulse of chert, associated with fracturing, also occurs. The knowledge provided by the characteristics and distribution of chert in these carbonates is significant, especially when considering that the La Silla Formation in San Juan province is the most quarried unit for the elaboration of lime.

A new long-tailed pterosaur, Wukongopterus lii gen. et sp. nov, is described based on an almost complete skeleton (IVPP V15113) representing an individual with an estimated wing span of 730 mm. The specimen was discovered in strata that possibly represent the Daohugou Bed (or Daohugou Formation) at Linglongta, Jianchang, Liaoning Province, China. Wukongopterus lii is a non-pterodactyloid pterosaur diagnosed by the first two pairs of premaxillary teeth protruding beyond the dentary, elongated cervical vertebrae (convergent with Pterodactyloidea), and a strongly curved second pedal phalanx of the fifth toe. The specimen further has a broken tibia that indicates an injury occurred while the individual was still alive. Taphonomic aspects provide indirect evidence of an uropatagium, supporting the general hypothesis that at least all non-pterodactyloid pterosaurs show a membrane between the hind limbs. A phylogenetic analysis including most non-pterodactyloid pterosaurs shows that Wukongopterus lii gen. et sp. nov. lies outside the Novialoidea, being cladistically more primitive than the Rhamphorhynchidae and Capylognathoides. This analysis differs from previous studies and indicates that more work is needed before a stable picture of non-pterodactyloid pterosaur relationships is achieved.

Jurassic African pterosaur remains are exceptionally rare and only known from the Tendaguru deposits, Upper Jurassic, Tanzania. Here we describe two right humeri of Tendaguru pterosaurs from the Humboldt University of Berlin: specimens MB.R. 2828 (cast MN 6661-V) and MB.R. 2833 (cast MN 6666-V). MB.R. 2828 consists of a three-dimensionally preserved proximal portion. The combination of the morphological features of the deltopectoral crest not observed in other pterosaurs suggests that this specimen belongs to a new dsungaripteroid taxon. MB.R. 2833 is nearly complete, and because of a long and round proximally placed deltopectoral crest it could be referred to the Archaeopterodactyloidea. It is the smallest pterosaur from Africa and one of the smallest flying reptiles ever recorded. These specimens confirm the importance of the Tendaguru deposits for the Jurassic pterosaur record. This potential, however, has to be fully explored with more field work.

This work presents a study of selected outcrops from the Pedra das Torrinhas Formation of the Guaritas Group (Cambrian, Camaquã Basin), near the basin bordering Encantadas Fault Zone. The studied succession includes alluvial fan deposits that pass laterally into eolian deposits. Sedimentary facies and architectural element analysis were performed, followed by sedimentary petrography and microscopic porosity analysis, aiming to characterize the porosity of the deposits and its spatial distribution. The main objective was to contribute to a better understanding of the porosity spatial distribution in depositional systems characterized by the interaction between alluvial and eolian processes, with special reference to deposits formed prior to the development of terrestrial plants. Porosity values are related to depositional processes, with higher porosities associated to eolian dune deposits (mean of 8.4%), and lower porosity related to interdunes (mean of 3.4%) and alluvial fans (mean of 4.3%). Architectural elements analysis revealed the spatial relationships of these deposits, a response to the interplay of the eolian and alluvial processes. The integration of porosity data reveals that the interaction of alluvial and eolian processes results in heterogeneous distribution of porosity at the facies association scale. Eolian reworking of alluvial facies increases porosity whereas sheet-flood and other alluvial processes in the interdune areas reduce porosity.

The SWAN wave model is widely used in coastal waters and the main focus of this work is on its application in a harbor. Its last released version - SWAN 40.51 - includes an approximation to compute diffraction, however, so far there are few published works that discuss this matter. The performance of the model is therefore investigated in a harbor where reflection and diffraction play a relevant role. To assess its estimates, a phase-resolving Boussinesq wave model is employed as well, together with measurements carried out at a small-scale model of the area behind the breakwater. For irregular, short-crested waves with broad directional spreading, the importance of diffraction is relatively small. On the other hand, reflection of the incident waves is significant, increasing the energy inside the harbor. Nevertheless, the SWAN model does not achieve convergence when it is set to compute diffraction and reflection simultaneously. It is concluded that, for situations typically encountered in harbors, with irregular waves near reflective obstacles, the model should be set without the diffraction option.

One of the major problems in the Brazilian agriculture is related to the production loss in the field, which, due to many factors, is not being considered. This article has the objective to develop a methodology to identify a quality index which integrates some crop quality variables which are able to indicate how the crop is developing in terms of loss in the field. The results have showed that the strategy of multi-criterion analysis and Fuzzy logic proved to be important tools for the assessment and preparation of a quality index for corn production. The index proposed performed well in representing the quality of agricultural operations when compared with reality.

Anticarsia gemmatalis nucleopolyhedrovirus (AgMNPV) is being used in Brazil as a biological insecticide. Host plant resistance of soybean to insects is been searched for and some authors have mentioned the interference of plant chemistry in virus efficiency. Interactions among soybean extracts of genotypes used as a source of resistance (PI 274454 and PI 227687) with different AgMNPV concentrations in populations of A. geatalis susceptible (S) and resistant (R) to the virus were studied at laboratory condition. Higher mortality was observed when larvae fed on diets with extracts of the soybean genotypes compared with those fed on a plain diet (control). The mean lethal concentration (LC50) was reduced about 10 ties in the S-population fed on diets containing PI 274454 extracts and different concentrations of AgMNPV, compared to control diet. Additive effect was predominantly observed when larvae fed on diets with extracts of soybean genotypes (PI 274454 and PI 227687) and AgMNPV for both larval populations. The pupal weight was negatively influenced by the extracts incorporated to the diets compared to control, for both larval populations, notably for R-population. The results suggest that, in general, leaf extracts of soybean resistant genotype did not cause any harmful effect on virus efficiency.

The carry-over effect of sub-lethal herbicides was investigated on the germination of seeds collected from surviving Chenopodium album plants, which had received 1/8, 1/8 twice, 1/8 three times, 1/4, 1/2, 1/1 doses of either pre-emergence ioxynil or post-emergence bentazone in a previous onion (Allium cepa) crop. Seeds were also collected from surviving C. album plants, which had received 1/4, 1/2, 1/1 of either pre-emergence pendimethalin, propachlor and linuron, or 1/8, 1/8 twice, 1/8 three times, 1/4, 1/2, 1/1 of post-emergence ioxynil or linuron in a previous leek (Allium porrum) crop. Seeds of surviving plants were collected and tested for germination at temperature of 5, 10, 15, 20 and 25°C. The effect of different temperatures on the total number of germinated seeds was significant. Germination was minimum at low temperatures (5°C or 10°C). Herbicides did not show any effect on germination of C. album and resulted in the same final germination percentage as seeds collected from the unsprayed control plots.

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Water at normal conditions is a fluid thermodynamically close to the liquid-vapor phase coexistence and features a large surface tension. This combination can lead to interesting capillary phenomena on microscopic scales. Explicit water molecular dynamics (MD) computer simulations of hydrophobic solutes, for instance, give evidence of capillary evaporation on nanometer scales, i.e., the formation of nanometer-sized vapor bubbles (nanobubbles) between confining hydrophobic surfaces. This phenomenon has been exemplified for solutes with varying complexity, e.g., paraffin plates, coarse-grained homopolymers, biological and solid-state channels, and atomistically resolved proteins. It has been argued that nanobubbles strongly impact interactions in nanofluidic devices, translocation processes, and even in protein stability, function, and folding. As large-scale MD simulations are computationally expensive, the efficient multiscale modeling of nanobubbles and the prediction of their stability poses a formidable task to the'nanophysical' community. Recently, we have presented a conceptually novel and versatile implicit solvent model, namely, the variational implicit solvent model (VISM), which is based on a geometric energy functional. As reviewed here, first solvation studies of simple hydrophobic solutes using VISM coupled with the numerical level-set scheme show promising results, and, in particular, capture nanobubble formation and its subtle competition to local energetic potentials in hydrophobic confinement.