RCAAP Repository

H-index in the Brazilian Academy of Sciences: comments and concerns

Bibliometric parameters have been used in order to evaluate a scientist's performance. The h-index has been gradually accepted as the most adequate parameter for this purpose. To have an idea of this index among Brazilian scientists, we performed an analysis of this parameter for the full members of the Brazilian Academy of Sciences (BAS). The h-index of 402 members listed in 10 distinct categories by the BAS was determined, cross-checked with the curriculum vitae of each of them listed at the Plataforma Lattes database (CVL) and compared with each other. Despite the large production, mostly in journals without impact factor, the h-indexes among the BAS members are comparatively low and show a large variation in all of the 10 categories, particularly in Biomedical and Physical sciences. The highest average of h-index values was found in Biomedical, Health and Chemical sciences; the lowest values were found in Human sciences where this index is meaningless. Several problems due to the trend that new and "fresh" publications need be constantly produced (the "bakery-effect") are discussed. This study points to the need of developing countries such as Brazil to invest in national scientific journals in order to make them gradually part of the mainstream journals. This would have a positive effect on bibliometric parameters of Brazilian researchers, including the h-index.

Year

2008

Creators

Kellner,Alexander W.A. Ponciano,Luiza C.M.O.

State estimation and optimal long period clinical treatment of HIV seropositive patients

Optimal control theory provides a very interesting quantitative method that can be used to assist the decision making process in several areas of application, such as engineering, biology, economics and sociology. The main idea is to determine the values of the manipulated variables, such as drug doses, so that some cost function is minimized, subject to physical constraints. In this work, the cost function reflects the number of CD4+T cells, viral particles and the drug doses. It is worth noticing that high drug doses are related to more intense side-effects, apart from the impact on the actual cost of the treatment. In a previous paper by the authors, the LQR - Linear Quadratic Regulator approach was proposed for the computation of long period maintenance doses for the drugs, which turns out to be of state feedback form. However, it is not practical to determine all the components of the state vector, due to the fact that infected and uninfected CD4+T cells are not microscopically distinguishable. In order to overcome this difficulty, this work proposes the use of Extended Kalman Filter to estimate the state, even though, because of the nonlinear nature of the involved state equations, the separation principle may not be valid. Extensive simulations were then carried out to investigate numerically if the control strategy consisting of the feedback of estimated states yielded satisfactory clinical results.

Year

2009

Creators

Grégio,Juliana M. Caetano,Marco A.L. Yoneyama,Takashi

Tori embedded in S³ with dense asymptotic lines

In this paper are given examples of tori T² embedded in S³ with all their asymptotic lines dense.

Year

2009

Creators

Garcia,Ronaldo Sotomayor,Jorge

New iodine derivatives of flavonol and isoflavone

The reaction of the flavonol 3,7,3', 4'-tetra-O-methylquercetin (1) and of the isoflavone 7,4'-di-O-methylgenistein (2) with alkaline iodine in methanol afforded four new iodine derivatives: 8-iodo-5-hydroxy-3,7,3', 4'-tetramethoxy- flavone (1a) and 6-iodo-5-hydroxy-3,7,3', 4'-tetramethoxyflavone (1b) from 1; 2 afforded a mixture of two compounds, identified as a racemic mixture of (±)-trans-5-hydroxy-2,3,7,4'-tetramethoxy-8-iodo-isoflavanone (2a) and (±)-trans-5-hydroxy-2,3,7,4'-tetramethoxy-6,8-diiodo-isoflavanone (2b). The formation of these different products reveals a significant difference involving the chemical interaction between the reactive site of α, β-unsaturated ketones of flavonol and isoflavone under the tested reaction conditions (using I2/KOH/MeOH). Furthermore, the trans stereo selectivity is noteworthy in the nucleophylic addition of methanol at the isoflavone α, β-unsaturated system. The structures were identified on the basis of spectral data, mainly 1D and 2D NMR and mass spectra.

Year

2009

Creators

Carvalho,Mário G. de Silva,Virginia C. da Silva,Tânia M.S. da Camara,Celso A. Braz-Filho,Raimundo

Ultrastructural features of Mimulus aurantiacus (Scrophulariaceae) pollen tubes in vivo

The aim of this study is to give information on ultrastructure of in vivo pollen tubes of Mimulus aurantiacus which were collected from the Botanical Garden of the University of California at Berkeley. Materials were prepared according to electron microscopy methods and examined under Zeiss electron microscope. Four zones were examined in the pollen tubes of Mimulus aurantiacus. APICAL ZONE: Mitochondria, smooth endoplasmic reticulum, rough endoplasmic reticulum, dictyosomes and secretory vesicles were observed. SUBAPICAL ZONE: This area contained abundant rough endoplasmic reticulum and occasionally some smooth endoplasmic reticulum. The polysomes, mitochondria, proplastids that contain starch, small vacuoles and a few lipid bodies were detected. NUCLEAR ZONE: Both generative and vegetative cell nuclei lie in this zone. The vegetative cell nucleus was large and long. Rough endoplasmic reticulum, mitochondria, ribosomes, dictyosomes, and amyloplasts that are rich of starch were observed. VACUOLATION AND PLUG FORMATION ZONE: Cytoplasm of the tubes was full of large vacuoles. Few organelles such as mitochondria, dictyosome and rough endoplasmic reticulum were detected along their periphery.

Year

2009

Creators

Ekici,Nuran Dane,Feruzan Olgun,Göksel

The synergetic modulation of the excitability of central gray matter by a neuropeptide: two protocols using excitation waves in chick retina

The isolated chick retina provides an in vitro tissue model, in which two protocols were developed to verify the efficacy of a peptide in the excitability control of the central gray matter. In the first, extra-cellular potassium homeostasis is challenged at long intervals and in the second, a wave is trapped in a ring of tissue causing the system to be under self-sustained challenge. Within the neuropil, the extra-cellular potassium transient observed in the first protocol was affected from the initial rising phase to the final concentration at the end of the five-minute pulse. There was no change in the concomitants of excitation waves elicited by the extra-cellular rise of potassium. However, there was an increase on the elicited waves latency and/or a rise in the threshold potassium concentration for these waves to appear. In the second protocol, the wave concomitants and the propagation velocity were affected by the peptide. The results suggest a synergetic action of the peptide on glial and synaptic membranes: by accelerating the glial Na/KATPase and changing the kinetics of the glial potassium channels, with glia tending to accumulate KCl. At the same time, there is an increase in potassium currents through nerve terminals.

Year

2009

Creators

Lima,Vera M.F. de Piqueira,José R.C. Hanke,Wolfgang

Reproductive biology of Echinometra lucunter (Echinodermata: Echinoidea) in a northeast Brazilian sandstone reef

The edible sea urchin Echinometra lucunter (Linnaeus, 1758) is a very common species on the sublittoral-midlittoral in Brazilian rocky shores. The aim of this work was to describe the gametogenesis and reproductive strategy of the E. lucunter population at Muro Alto beach in the Northeast coast of Brazil from August 2004 to August 2005. A total of 240 specimens were collected on the sandstone reef flat from a tidepool during spring low tides. The overall sex ratio was1.12:1,withoutsignificanttemporalvariationexceptinOctober2004. Firsts sexual maturity ocurred in individuals from a diameter of 20.8 mm. There was not a significant difference in gonad index between females and males during the sampling period. The female's gonad index variation was associated with a well-defined spawning, corroborated by the histological analysis of the gonads, which demonstrates sex differences of the gamete production. By contrast, the males showed no clear pattern. It is suggested that continuous reproduction with seasonal peaks in the E. lucunter population occurs at Muro Alto beach.

Year

2009

Creators

Lima,Eduardo J.B. Gomes,Paula B. Souza,José R.B.

Mortality of the defoliator Euselasia eucerus (Lepidoptera: Riodinidae) by biotic factors in an Eucalyptus urophylla plantation in Minas Gerais State, Brazil

Euselasia eucerus (Hewitson, 1872) (Lepidoptera: Riodinidae) is a Brazilian native species commonly found in Eucalyptus plantations. Biotic mortality factors of this defoliator were studied in a Eucalyptus urophylla plantation in Minas Gerais State, Brazil aiming to identify natural enemies and their impact on this insect. Euselasia eucerus had biotic mortality factors during all development stages. The most important were Trichogramma maxacalii Voegelé and Pointel, 1980 (Hymenoptera: Trichogrammatidae) during egg stage (48.9%), a tachinid fly (Diptera: Tachinidae) during larval stages (10%) and Itoplectis sp. (Hymenoptera: Ichneumonidae) during pupal stage (52.2%). The parasitism rate was higher in the basal part of the plant canopy (37.8%).

Year

2009

Creators

Zanuncio,José C. Torres,Jorge B. Sediyama,Camilla A.Z. Pereira,Fabricio F. Pastori,Patrik L. Wermelinger,Eduardo D. Ramalho,Francisco S.

Modulatory effects of rutin on biochemical and hematological parameters in hypercholesterolemic Golden Syrian hamsters

Flavonoids have been reported to exhibit several pharmacological properties, mainly in cardiovascular and inflammatory diseases. In the present study, we observed that rutin, a known glycosylated flavonoid isolated from Dimorphandra mollis, had a lowering effect on plasma triglyceride levels of diet-induced hypercholesterolemic Golden Syrian hamsters, but did not change total cholesterol and high-density lipoprotein cholesterol levels. Moreover, high-fat or rutin supplemented diets showed no immunotoxic effects, since no significant changes were observed on total white blood cells, granulocytes and mononuclear cells, as well as on the neutrophil apoptosis degree, when compared to untreated animals. Therefore, rutin seems to be a selective and non-toxic modulator of hypercholesterolemia, which can be promising for the development of new drugs.

Year

2009

Creators

Kanashiro,Alexandre Andrade,Daiani C.O. Kabeya,Luciana M. Turato,Walter M. Faccioli,Lucia H. Uyemura,Sérgio A. Lucisano-Valim,Yara M.

Dating minerals by ID-TIMS geochronology at times of in situ analysis: selected case studies from the CPGeo-IGc-USP laboratory

Since 1964, the Center for Geochronological Research - CPGeo, one of the interdepartmental centers of the Instituto de Geociências (IG) of São Paulo University, has developed studies related to several geological processes associated with different rock types. Thermal Ionization Mass Spectrometry Isotopic Dilution (ID-TIMS) has been the technique widely used in the CPGeo U-Pb Laboratory. It provides reliable and accurate results in age determination of superposed events. However, the open-system behavior such as Pb-loss, the inheritance problem and metamictization processes allow and impel us to a much richer understanding of the power and limitations of U-Pb geochronology and thermochronology. In this article, we present the current methodology used at the CPGeo-IGc-USP U-Pb laboratory, the improvements on ID-TIMS method, and report high-precision U-Pb data from zircon, monazite, epidote, titanite, baddeleyite and rutile from different rock types of several domains of the Brazilian south-southeast area, Argentina and Uruguay.

Year

2009

Creators

Passarelli,Cláudia R. Basei,Miguel A.S. Siga Jr.,Oswaldo Sato,Kei Sproesser,Walter M. Loios,Vasco A.P.

High spatial resolution analysis of Pb and U isotopes for geochronology by laser ablation multi-collector inductively coupled plasma mass spectrometry (LA-MC-ICP-MS)

Age determinations using the 235U and 238U radioactive decay series to the daughter isotopes 207Pb and 206Pb, respectively, using the mineral zircon (ZrSiO4), are widely used to decipher geological processes. A new method developed in the last couple of years, the laser ablation multi-collector inductively coupled plasma mass spectrometry (LA-MC-ICP-MS), overcomes previous laborious sample preparation, and yields isotopic ratios and age data with a high spatial resolution of ten of microns. The present study describes the analytical set-up and data reduction process as presently applied at the Laboratory for Geochronology of the University of Brasília. It explores the precision and accuracy of the method by cross-analysing three international zircon standards. We arrive at a precision of 1.9 to 3.7% (2σ SD) and an accuracy of 0.6 to 3.8% (2σ SD) for and U isotopic ratios of the standards. We also apply the method to two natural zircon samples, which have previously been dated by other analytical methods. A comparison of the results show a good conformity of the age data,being whitin the error limits. The data demonstrate the great analytical potential of the method for rapid, precise and accurate U-Pb isotopic analyses on the micron scale.

Year

2009

Creators

Bühn,Bernhard Pimentel,Márcio M. Matteini,Massimo Dantas,Elton L.

Study of mural paintings by Fulvio Pennacchi in São Paulo City by mineralogical techniques

The present research deals with two mural paintings made in 1947 with the fresco technique by Fulvio Pennacchi in the Catholic Chapel of the Hospital das Clínicas (São Paulo City, Brazil), namely the Virgin Annunciation and the Supper at Emmaus. This study regards the materials and painting techniques used by the artist, based on historical research,on in situ observations and laboratory analytical techniques (stereomicroscopy,scanning electron microscopy with an energy dispersive spectrometer, X-ray diffractometry, electron microprobe, images obtained with UV-light), aiming to improve the methods of characterization of objects of our cultural heritage, and to enhance its preservation accordingly. The results lead to the identification of the plaster components and of distinct layers in the frescoes, besides further information on grain size, impurities and textures, composition of pigments, and features of deterioration, such as efflorescences. The degree of degradation of the murals painting was assessed by this way. Our data suggest that a single layer of plaster was used by Pennacchi, as a common mortar with fine- and medium-grained aggregates. Differences in texture were obtained by adding gypsum to the plaster.

Year

2009

Creators

Del Lama,Eliane A. Tirello,Regina A. Andrade,Fábio R.D. de Kihara,Yushiro

Comparison of Polycyclic Aromatic Hydrocarbon (PAHs) concentrations in urban and natural forest soils in the Atlantic Forest (São Paulo State)

Studies about pollution by Polycyclic Aromatic Hydrocarbons (PAHs) in tropical soils and Brazil are scarce. A study was performed to examine the PAHs composition, concentrations and sources in red-yellow Oxisols of remnant Atlantic Forest of the São Paulo State. Sampling areas were located in an urban site (PEFI) and in a natural one (CUNHA).The granulometric composition, pH, organic matter content and mineralogical composition were determined in samples of superficial soils. The sum of PAHs (ΣHPAs) was 4.5 times higher in the urban area than in the natural one. Acenaphthylene, acenaphthene, fluorene, phenanthrene and fluoranthene have been detected in the soils of both areas and presented similar concentrations. Acenaphthene and fluorene were the most abundant compounds. Pyrene was twice more abundant in the soils of natural area (15 µg.kg-1) than of the urban area and fluoranthene was the dominant compound (203 µg.kg-1) in urban area (6.8 times higher than in the natural area). Some compounds of higher molecular weight, which are tracers of vehicular emissions showed significant concentrations in urban soils. Pyrene represented 79% of ΣPAHs whereas it has not been detected in natural soils. The results showed that forest soils in urban area are characterized by the accumulation of high molecular weight compounds of industrial and vehicular origin.

Year

2009

Creators

Bourotte,Christine Forti,Maria Cristina Lucas,Yves Melfi,Adolpho J.

A supramolecular proposal of lignin structure and its relation with the wood properties

In spite of the great importance of cellulose the lignin is considered the second most abundant substance of the wood. However, little attention has been given it, mainly to wood properties. The lignin as well as other structural compounds (cellulose and hemicelluloses), has obviously an important role on the wood properties, probably due its composition and existent bonds. In general lignins have β-O-4 (Alkyl Aril Ether) as majoritary bond. This bond in a continued structure form big molecules with spiral conformation as virtual model. Based on this idea, lignins that have high/low β-O-4 content may have differentiated spiraled structures,suggesting different behaviors on the wood properties,which shows that the lignins (Guaicyl:Syringyl (GS)) of angiosperms, for example, which have higher β-O-4 content would present higher spiral conformation than gymnosperms lignins(HG). On the other hand HG lignins have chance of being more anchored on the matrix compound than GS lignins. In this context, the β-O-4 bonds of lignins possibly affect the wood properties, therefore, it is considered relevant for wood technology science discussion.

Year

2009

Creators

Abreu,Heber S. Latorraca,João V.F. Pereira,Regina P.W. Monteiro,Maria Beatriz O. Abreu,Fábio A. Amparado,Kelysson F.

Physicochemical characteristics and sensory profile of honey samples from stingless bees (Apidae: Meliponinae) submitted to a dehumidification process

This study was conducted to evaluate the effect of a dehumidification process on the physicochemical and sensory characteristics of stingless-bee honey. Melipona scutellaris and M. quadrifasciata honey samples were submitted to a dehumidification process and to physicochemical (reducing sugars, apparent sucrose, moisture, diastatic activity, hydroxymethylfurfural, ash, pH, acidity, and electric conductivity) and sensory evaluations (fluidity, color, aroma, crystallization,flavor,and acceptability). The results indicated that the dehumidification process does not interfere with honey quality and acceptability.

Year

2009

Creators

Carvalho,Carlos A.L. Sodré,Geni S. Fonseca,Antonio A.O. Alves,Rogério M.O. Souza,Bruno A. Clarton,Lana

Pore system changes of damaged Brazilian oxisols and nitosols induced by wet-dry cycles as seen in 2-D micromorphologic image analysis

Soil pore structure characterization using 2-D image analysis constitutes a simple method to obtain essential information related to soil porosity and pore size distribution (PSD). Such information is important to infer on soil quality, which is related to soil structure and transport processes inside the soil. Most of the time soils are submitted to wetting and drying cycles (W-D), which can cause important changes in soils with damaged structures. This report uses 2-D image analysis to evaluate possible modifications induced by W-D cycles on the structure of damaged soil samples. Samples of three tropical soils (Geric Ferralsol, GF; Eutric Nitosol, EN; and Rhodic Ferralsol, RF) were submitted to three treatments: 0WD, the control treatment in which samples were not submitted to any W-D cycle; 3WD and 9WD with samples submitted to 3 and 9 consecutive W-D cycles, respectively. It was observed that W-D cycles produced significant changes in large irregular pores of the GF and RF soils, and in rounded pores of the EN soil. Nevertheless, important changes in smaller pores (35, 75, and 150 µm) were also observed for all soils. As an overall consideration, it can be said that the use of image analysis helped to explain important changes in soil pore systems (shape, number, and size distribution) as consequence of W-D cycles.

Year

2009

Creators

Pires,Luiz F. Reichardt,Klaus Cooper,Miguel Cássaro,Fabio A.M. Dias,Nivea M.P. Bacchi,Osny O.S.

Bromophenol concentrations in fish from Salvador, BA, Brazil

The main objective of this work is to evaluate the occurrence of bromophenols (2bromophenol, 4bromophenol, 2,4dibromophenol, 2,6dibromophenol and 2,4,6tribromophenol), in the flesh and guts in two species of the LutjanidaeFamily: Lutjanus synagris and Ocyurus chrysurus. The bromophenols were extracted by steam distillation with pentaneether (7:3 v/v), identified by reverse phase High Performance Liquid Chromatography (HPLCUV), and quantified bythe externalstandard method. Total bromophenol concentrations were similar in the muscle of both species, rangingfrom 36 ng g¹ to 349 ng g¹. The total bromophenol concentrations in stomach (ranging from 12 ng g¹ to 586 ng g¹)were slightly higher than in muscle. The presence of bromophenol in the muscles of the species under study may occuras a result of their diet. The results of this work are therefore expected to contribute toward a better understanding ofthe path of bromophenol absorption from the fish's stomach to the rest of its body.

Year

2009

Creators

Oliveira,Aline S. Silva,Vilma M. Veloso,Márcia C.C. Santos,Gislaine V. Andrade,Jailson B. de

Chemical composition, botanical evaluation and screening of radical scavenging activity of collected pollen by the stingless bees Melipona rufiventris (Uruçu-amarela)

Stingless bees in Brazil are indigenous and found all over the country. Bee pollen is used for its nutritional value in the human diet. It is made up of natural flower pollen mixed with nectar and bee secretions. In order to evaluate the chemical composition, free radical scavenging activity, and botanical origin, sample of pollen loads from stingless bee, Melipona rufiventris (Uruçu amarela) was studied. The EtOAc extract of pollen of Melipona rufiventris yielded the following compounds: p-hydroxycinnamic acid, dihydroquercetin, isorhamnetin, isorhamnetin3-O-(6"-O-E-p-coumaroyl)-β-D-glucopyranoside, luteolin, and quercetin. This is the first report of the isolation of isorhamnetin3-O-(6"O-E-p-coumaroyl)β-D-glucopyranoside from pollen. The free radicalscavenging activities of different solvent extracts of pollen were determined using DPPH assay. This activity decreases in the order: EtOAc>EtOH>Hexane extract. It appears that the EtOAc extract of the pollen is a good scavenger of active oxygen species. The botanical evaluation of pollen loads showed the composition by two pollen types, with the dominant type (97.3%) being Scopariadulcis (L.) (Scrophulariaceae) and the minor one Senna obtusifolia (L.) Irwin & Barneby (Fabaceae). This suggests a specific foraging behavior in Melipona rufiventris bees, even in an environment with such a rich botanical diversity as the Northeastern Brazil.

Year

2009

Creators

Silva,Tania M.S. Camara,Celso A. Lins,Antonio C.S. Agra,Maria de Fátima Silva,Eva M.S. Reis,Igor T. Freitas,Breno M.

Preparation and characterization of hydroxyapatite-coated iron oxide particles by spray-drying technique

Magnetic particles of iron oxide have been increasingly used in medical diagnosis by magnetic resonance imaging and in cancer therapies involving targeted drug delivery and magnetic hyperthermia. In this study we report the preparation and characterization of iron oxide particles coated with bioceramic hydroxyapatite by spray-drying. The iron oxide magnetic particles (IOMP) were coated with hydroxyapatite (HAp) by spray-drying using two IOMP/HAp ratios (0.7 and 3.2). The magnetic particles were characterized by way of scanning electronic microscopy, energy dispersive X-ray, X-ray diffraction, Fourier transformed infrared spectroscopy, flame atomic absorption spectrometry,vibrating sample magnetometry and particle size distribution (laser diffraction). The surface morphology of the coated samples is different from that of the iron oxide due to formation of hydroxyapatite coating. From an EDX analysis, it was verified that the surface of the coated magnetic particles is composed only of HAp, while the interior containsiron oxide and a few layers of HAp as expected. The results showed that spray-drying technique is an efficient and relatively inexpensive method for forming spherical particles with a core/shell structure.

Year

2009

Creators

Donadel,karina Felisberto,Marcos D.V. Laranjeira,Mauro C.M.